Survey Data Analysis
Contact details of instructors
All instructors are based at the:
 Department of Methodology and Statistics  Utrecht University
 Postal address: Postbus 80.140, 3508 TC Utrecht
 Visiting address: Padualaan 14, 3584 CH Utrecht
The instructors may be in their office, but it helps to email first and make an appointment.
For all matters related to the administration and organization of the course, as well as grades, please contact p.lugtig@uu.nl , call: 0302537761 or stop by in office A.130. Peter is usually around MondayFriday 09:0017:00.
If you have questions about course materials, please contact the instructor who is teaching that week (see the schedule below):
Instructor  Availability  

Peter Lugtig  p.lugtig@uu.nl  office A.103 MoFri 
Stef van Buuren  s.vanbuuren@uu.nl  office C.119 Mo 
Gerko Vink  g.vink@uu.nl  office C.124 MoFri 
Bella Struminskaya  b.struminskaya@uu.nl  office C.116 MoFri 
Vera Toepoel  v.toepoel@uu.nl  office C.116 Mo, Thu 
Course Content
This course aims to give students a firm introduction in three broad, and related topics:

Inference: how do we use small sets of data to produce knowledge about the world around us?

Survey data analysis, in particular sampling and analyzing complex datasets: Sampling data is an important element of many statistical techniques. Understanding different ways to sample data is important not only for understanding how we can efficiently design a survey, but also for understanding more complex statistical techniques discussed later in the Research Master MSBBSS. Datasets that are generated with a particular sampling mechanism need to include that mechanism in their analysis. Also, surveys normally suffer from nonresponse and missing data more generally. The course discusses in some detail how to deal with complex sampling designs and missing data in carrying out statistical analyses.

Survey design: why are surveys designed the way they are? We here focus on the overall design of a study, not on the design of individual survey questions.
Inference is a key goal of almost any scientific project. How does a test with a new drug generalize to how the drug works for everyone? How do tests for Covid19 with patients with health complaints (cold, fever) in a region generalize to the stage of the Covid19 epidemic nationwide? How do polls about future voting behavior in the U.S. presidential election predict the outcome of that election?
Inference is something you do every day. When you take one bite of your pizza, the taste of that one piece will tell you how nice the pizza is going to be. But you can perhaps imagine that testing whether a drug ‘works’, or who will become the next U.S. president is perhaps more complex. We will focus on discussing ways to do sampling (selecting what part(s) of the pizza to taste) in an efficient way given your target population and research question. We will also discuss where sampling breaks down: in some cases, you have data at your disposal (e.g., social media posts) that are perhaps useful to understand how individuals think about a topic, but how do you use your sample in this case to say something about how the general population thinks about a topic. And in case you have a choice, would you in the 21st century rather use a small random sample that suffers from various problems (high nonresponse rates) and is costly, or a large amount of less costly twitter data to study political opinions. This is what we focus on when we will be discussing inference.
We will also study in more detail how to sample in practice. Sampling does not only play a role in inference from a small dataset to a population, but there are many techniques in statistics, such as bootstrapping that rely on sampling and resampling techniques. In survey research, sampling techniques are used to obtain a sample that is efficient (as small as possible), but large enough to actually allow for inference. Apart from statistical efficiency, we also have to deal with realworld practical issues in sampling. Sometimes, populations (e.g., schoolchildren) can only be sampled via schools (we call this a cluster). Costs are also important. Rather than studying patients all across the country it is less costly (and just much easier), to restrict a study to just a few hospitals, and infer what would have happened had the drug also been administered to patients in other hospitals.
Statistical methods for analyzing survey data will be discussed from a designbased perspective, where the only source of random variation is induced by the sampling mechanism. The basic techniques of survey sampling will be discussed; simple random sampling, stratification, cluster and multistage sampling, and probability proportional to size sampling.
In real life, studies will almost always suffer from missing data. Either respondents cannot or do not want to participate in a study (unit nonresponse), or only participate in some parts of the study (item nonresponse). In both cases, those missing data bring a risk that bias is introduced in the process of inference. In the second part of the course we will discuss two methods on how to deal with missing data (weighting and imputation) in detail.
Throughout the course, practical exercises are conducted using the software package R. This course considers the nature of various general methods, the supporting statistical theory, but also practical applications. The Rpackages survey, sampling and mice will be used for statistical computations and are part of the course material.
The course is presented at a moderately advanced statistical level. Mathematical aspects of sampling theory will not be developed, but statistical notation and some small algebraic derivations will be discussed occasionally. Understanding of applied statistics is necessary, which includes a basic understanding of linear regression and ANOVA. The course builds on materials discussed in the other courses offered in the first semester of the Research Master Methodology and Statistics for the Social, Behavioural and Biomedical Sciences.
Aims of the course
By the end of the course students will:
 Obtain knowledge and skills in designing and applying survey research methods;
 Understand the most important elements of designbased and modelbased inference;
 Understand tradeoffs between bias, variance, and costs of survey sampling designs;
 Understand the impact of survey design features on survey error and survey bias;
 Obtain knowledge on survey data collection methods;
 Apply the understanding of the methods discussed in the course to critically analyse an existing complex survey data survey;
 Understand how to perform the analysis in cases of missing data (item and unitnonresponse);
 Analyze survey data using the statistical software R;
 Present the findings from survey analysis conducted in R in form of a research paper and presentation.
Literature
Books Weeks 19:
 Stuart, Alan (1984). The ideas of sampling. Available online. Do not buy this book before the course starts and wait for instructions on how to obtain it.
Book for missing data (weeks 46,47)
 Van Buuren, Stef (2018). Flexible Imputation of Missing Data . CRC/Chapman & Hall, FL: Boca Raton. Freely available from https://stefvanbuuren.name/fimd/ .
Articles to be used throughout the course:
All articles below are available by searching for the title in a search engine for academic publications. Doing so from within the UUdomain will show direct links. www.scholar.google.com is the teacher’s favorite search engine.
 Biemer, P. P. (2010). Total survey error: Design, implementation, and evaluation. Public Opinion Quarterly, 74(5), 817848.
 Blumenthal, M., Clement, S., Clinton, J. D., Durand, C., Franklin, C., Miringoff, L., … & Witt, G. E. (2017). An evaluation of 2016 election polls in the US. [link]
 Meng, X. L. (2018). Statistical paradises and paradoxes in big data (I): Law of large populations, big data paradox, and the 2016 US presidential election. The Annals of Applied Statistics, 12(2), 685726.
 Groves, R. M., & Lyberg, L. (2010). Total survey error: Past, present, and future. Public opinion quarterly, 74(5), 849879.
 Lynn (1996) Weighting for nonresponse. Survey and Statistical Computing 1996, edited by R. Banks
 Kalton, G., & FloresCervantes, I. (2003). Weighting methods. Journal of official statistics, 19(2), 81.
 Brick, J. M. (2013). Unit nonresponse and weighting adjustments: A critical review. Journal of Official Statistics, 29(3), 329353.
 de Leeuw, E., Hox, J., & Luiten, A. (2018). International nonresponse trends across countries and years: an analysis of 36 years of Labour Force Survey data. Survey Methods: Insights from the Field, 111.
 Little, R.J. (2004). To model or not to model? Competing modes of inference for finite population sampling. Journal of the American Statistical Association, 99, 546556.
 Cornesse, C., Blom, A. G., Dutwin, D., Krosnick, J. A., De Leeuw, E. D., Legleye, S., … & Struminskaya, B. (2020). A Review of Conceptual Approaches and Empirical Evidence on Probability and Nonprobability Sample Survey Research. Journal of Survey Statistics and Methodology.
 Biemer Paul B., Edith de Leeuw Stephanie Eckman Brad Edwards Frauke Kreuter Lars E. Lyberg N. Clyde Tucker Brady T. West (eds.) (2017). Total Survey Error in Practice. Chapters 3 “Big Data: A Survey Research Perspective” and 2 “Total Twitter Error”. John Wiley & Sons. Available through UU library (DOI:10.1002/9781119041702)
 De Leeuw, E.D. (2018). MixedMode: Past, Present, and Future. Survey Research Methods, 12, 2, 7589. https://ojs.ub.unikonstanz.de/srm/article/view/7402/6582
 Toepoel, de Leeuw & Hox (2019). Single and mixedmode survey data collection. Sage Research Methods foundations (on blackboard)
 Kolenikov, S., & Kennedy, C. (2014). Evaluating Three Approaches to Statistically Adjust for Mode Effects. Journal of Survey Statistics and Methodology, 2(2).
Additional literature (to get more indepth information during or after the course)
 Lohr, Sharon (2009). Sampling: Design and Analysis (2nd ed.). Boston: Brooks/Cole.
This book should be available for under $50. There are 2 versions of the 2nd edition (an alternative version published by Taylor & Francis); both are identical. Datasets and code (in R
) referenced in the book are available through:
https://www.sharonlohr.com/samplingdesignandanalysis
.
Preparation and course structure
The study load for this course is 210 hours (28 hours per EC). There are 15 weeks (week 3751 with a classfree in week 43) with meetings in which we expect the average workload per week to be 12 hours. The remaining 30 hours should be spent preparing for the course, and/or finishing the final report after week 51. Some students may not need to prepare for the course, and some students will probably not need to work on the final report after week 51.
Expected time investment
The course load is expected to be 12 hours per week on average. Every week has a 3hour inperson meeting. These meetings will generally combine a lecture (approx. 75 min) a break (15 min), and one or more class exercises (90 minutes). Before every lecture, students need to: (1) read articles and/or book chapters in some detail (3 hours), and (2) prepare a take home exercise (2 hours), while sometimes, class exercises will need to be finished or reviewed prior to the meeting (1 hour). The remaining 3 hours per week are to be spent on preparing and reviewing class materials for the exam (week 45), or working on the final assignment (week 51). Please note that these time estimates are average estimates. They may vary by person or by week.
Students are expected to read the literature before attending the respective meeting. Please plan the time to actually do this. Meetings will be much more productive and reach a higher level if everyone comes prepared for the meeting.
All course materials will be available on the course website: [www.peterlugtig.com/courses/SDA]. The schedule (including rooms) can be found on Blackboard. In case there are last minute changes to the meeting (e.g. because of illness, or important updates to course materials), announcements will be sent via email to your @students.uu.nl address. It is thus important to check your email regularly.
Attendance
Lectures and practicals are compulsory. It is important to attend all classes to fully understand the theory and to obtain required practical skills for survey data analysis. However, if you cannot attend a meeting, for example due to sickness, an exception can be made. Course materials and answer to exercises will be posted on the course website. When you cannot attend a meeting, you should inform the teacher by email (as soon as possible, preferably before the start of the class).
The impact of Covid19 on the course
Normally, teaching happens physically. In 2020, the course was organized fully online, but the idea (as of spring 2021!) is to deliver the course in person. We will however occasionally use Microsoft Teams to meet up in (sub) groups, especially in the 2nd half of the course.
This is usually about the point where most students have stopped reading the course manual, and search for the grading and homework sections. If you do end up actually reading this sentence (good on you!) please send me a picture of some ice cream. You will find out later what happens.
Links
Software
Example Datasets
Supplemental Reading
For those who want to read more about survey methodology in practice or the statistical treatment of survey methods; some suggestions for supplemental reading.
 Chambers, R. L. and Skinner, C.J. Eds. (2003). Analysis of survey data. Hoboken, NJ: Wiley. (The statistical book on survey methods that explains different methods in detail. Detailed equations and the book is meant for the professional (survey) statistician.
 De Leeuw, E. D., Hox, J. J., and Dillman, D. A. Eds. (2008). International Handbook of Survey Methodology. Routledge Academic. (http://joophox.net/papers/SurveyHandbookCRC.pdf). (Reference book for survey researchers and practitioners, for those who collects and use survey data.)
 Fowler, F. J. (2009). Survey research methods. Oakfield: Sage. A very easy (nonstatistical) introduction in survey research methods; also known as the nonquantitative textbook on survey methods.
 Groves, Fowler, Couper, Lepkowski, Singer, Tourangeau. (2009). Survey methodology. Hoboken, NJ: Wiley. More thorough discussion of data collection methods, often recommended to practicing survey methodologists.
 Valliant, R., Dever, J.A., and Kreuter, F. (2013). Practical Tools for Designing and Weighting Survey Samples. Springer. This book is aimed at constructing a sample design; determination of sample size for single and multistage sampling. Rsoftware PracTools to do the computations.
Grading and Examination
Two individual assignments (each 25% of your grade). The average of the two assignments should not be lower than 5.50.
 Assignment 1 comprises weeks 3741 and is focused on sampling designs in surveys. It combines some theoretical questions about the analysis of a fictitious dataset on icecream sales in Italy. We will here test your understanding of the theory of sampling, implications for sample design, and doing some basic analyses in R.
 Assignment 2 comprises the materials of weeks 4247. You here have to correct for both unit and item nonresponse for an adopted survey. The goal of this assignment is to independently work through the survey documentation of a reallife survey to understand how the survey was designed with a focus on the sampling design, fieldwork and nonresponse. There are some exercises to prepare for this assignment in weeks 3744.
Final group assignment (50% of final grade)
 A final assignment is a presentation of a group (of about four members), which concerns a survey data analysis using techniques discussed in the course. The final assignment will make up 50% of the final grade. The presentation and a technical report (showing how results are obtained in R), are included in the grading. Group work is supposed to reflect the work of all group members and each member should contribute to improve the level of the work. Inform the teacher when a member is not willing to contribute to the group work or is not investing enough effort and/or time.
A group presentation is due at the final meeting of the course in week 51. The final report is due before Monday January 15, 17:00. Both are part of the final assignment.
Students need to get a 5.5 at the minimum for the two assignments, and achieve a weighted average of at least 5.5 as a final grade in order to pass the course. If a student does not make the minimum grade, there will be additional assignment that will allow the student to pass the course. Deadlines and requirements for any additional assignment will be discussed with the individual student.
Link between tests and course aims
Aims  Dublin Descriptors  How/where tested? 

Obtain knowledge and skills in designing and applying survey research methods  DD1  (Take home) exercises week 3744,4550 Assignment 1 
Understand the most important elements of designbased and modelbased inference  DD1  (Take home) exercises week 37,38 Assignment 1 
Understand tradeoffs between bias, variance, and costs of survey sampling designs  DD2  (Take home) exercises week 37,38,44 Assignment 1 
Understand the impact of survey design features on survey error and survey bias  DD3  (Take home) exercises week 37,38,44,4850 Assignment 2 
Obtain knowledge on survey data collection methods  DD1  (Take home) exercises week 37,38,44,4850 Assignment 2 
Apply the understanding of the methods discussed in the course to critically analyse an existing complex survey data survey  DD3, DD5  Group assignment in week 51 
Understand how to perform the analysis in cases of missing data (item and unitnonresponse)  DD2  (Take home) exercises week 4546 Assignment 2 Group assignment in week 51 
Analyze survey data using the statistical software R  DD2  (Take home) exercises week 3943,4547 Group assignment in week 51 
Present the findings from survey analysis conducted in R in form of a research paper and presentation  DD4  Group assignment week 51 
Course overview
Week  Date  Topic of the week  Class exercise  Home exercise  Reading 

36  31/08  No class  None  
37  7/09  Two models of inference: Design vs. model based  American election survey dataset. Exercises 
Adopt a survey  https://www.technologyreview.com/2020/02/14/844770/pollstersgotitwronginthe2016electionnowtheywantanothershot/ Blumenthal, M., Clement, S., Clinton, J. D., Durand, C., Franklin, C., Miringoff, L., … & Witt, G. E. (2017). An evaluation of 2016 election polls in the US. link Meng, X. L. (2018). Statistical paradises and paradoxes in big data (I): Law of large populations, big data paradox, and the 2016 US presidential election. The Annals of Applied Statistics, 12(2), 685726. https://www.politico.com/news/2020/06/17/trumppollsbiden324210 
38  14/09  Total Survey Error and modes  Error and bias exercise in R  What is TSE in survey of your choice?  Groves, R. M., & Lyberg, L. (2010). Total survey error: Past, present, and future. Public opinion quarterly, 74(5), 849879. Biemer, P. P. (2010). Total survey error: Design, implementation, and evaluation. Public Opinion Quarterly, 74(5), 817848. 
39  21/09  Simple random sampling  Sampling exercise  Setting up Svydesign in R (learn R)  Lohr (2010) chapters 1 (intro), 2 Stuart (1984) until page 34 
40  28/09  Stratified and cluster sampling  R exercises  Sampling design of adopted survey  Lohr (2010) chapters 3, 5, 6 Stuart (1984) p. 3571 
41  5/10  R practical on svydesign  R exercise  More R exercises  Assignment 1: due 9/10 
42  12/10  Model assisted survey estimation  R exercise  R exercises  Lohr chapters 4, 7 Stuart (1984) 7190 
43  19/10  Classfree week  
44  26/10  Nonresponse and weighting  R exercise part 1  R exercise part 2  De Leeuw, E., Hox, J., & Luiten, A. (2018). International nonresponse trends across countries and years: an analysis of 36 years of Labour Force Survey data. Survey Methods: Insights from the Field, 111 Kalton, G., & FloresCervantes, I. (2003). Weighting methods. Journal of official statistics, 19(2), 81. Brick, J. M. (2013). Unit nonresponse and weighting adjustments: A critical review. Journal of Official Statistics, 29(3), 329353. Optional: Bethlehem, J. G., & Keller, W. J. (1987). Linear weighting of sample survey data. Journal of official Statistics, 3(2), 141153. Optional: Lynn (1996) Weighting for nonresponse. Survey and Statistical Computing 1996, edited by R. Banks 
45  02/11  
46  09/11  Missing data 1  R exercise  R exercise  Chapters 13 from S. van Buuren. Flexible Imputation of Missing Data. Second Edition. CRC/Chapman & Hall, FL: Boca Raton, 2018. 
47  16/11  Missing data 2  R exercise  R exercise  Chapters 45 from S. van Buuren. Flexible Imputation of Missing Data. Second Edition. CRC/Chapman & Hall, FL: Boca Raton, 2018. Assignment 2 due: Friday 20/11 
48  23/11  Modes  Students discuss alternatives to the mixedmode presentations of their peers  Students prepare in groups a presentation about the mixedmode implications of their dataset  De Leeuw, E.D. (2018). MixedMode: Past, Present, and Future. Survey Research Methods, 12, 2, 7589. https://ojs.ub.unikonstanz.de/srm/article/view/7402/6582 Toepoel, de Leeuw & Hox (2019). Single and mixedmode survey data collection. Sage Research Methods foundations (on blackboard) Kolenikov, S., & Kennedy, C. (2014). Evaluating Three Approaches to Statistically Adjust for Mode Effects. Journal of Survey Statistics and Methodology, 2(2). 
49  30/11  Nonprob inference  Little, R.J. (2004). To model or not to model? Competing modes of inference for finite population sampling. Journal of the American Statistical Association, 99, 546556. https://www.youtube.com/watch?v=RIHGjjnEjA Cornesse, C., Blom, A. G., Dutwin, D., Krosnick, J. A., De Leeuw, E. D., Legleye, S., … & Struminskaya, B. (2020). A Review of Conceptual Approaches and Empirical Evidence on Probability and Nonprobability Sample Survey Research. Journal of Survey Statistics and Methodology. Meng 

50  07/12  Designed big data  Work out a scenario of combining surveys with passive data  Analysis of passively collected data in R  Biemer Paul B., Edith de Leeuw et al. (eds.) (2017). Total Survey Error in Practice. Available through UU library (DOI:10.1002/9781119041702) Chapter 3 “Big Data: A Survey Research Perspective” Chapter 2 “Total Twitter Error”. John Wiley & Sons 
51  14/12  Presentations  Hand in with written feedback on Jan 15 
Build a ‘presentation’ Peerreview Discussion meeting 

3  15/01  Final assignment due at 17:00 
Weekbyweek schedule
Week 36: Preparation
Prepare: please see the document (preparation for semester 1 of the Research Master) that was emailed to you upon being accepted into the ReMa programme.
Week 37: Introduction to Survey Research  Two modes of inference
Topic: The majority of studies in the social, behavioral and medical sciences uses some form of survey data. Often surveys based on a small sample are used to say something about a larger population. This step is called inference. Many of the developments in statistics in the 20th century centered around the developments of valid inference procedures. For example, pvalues and Confidence Intervals are designed to reflect the uncertainty that surrounds the use of a small sample for saying something about the larger population. This model of inference is called designbased inference. Crucial in design based inference is the process of drawing a random sample in a controlled way from the population. A second model of inference does not a neat random sample, but uses ‘found’ data to do inference, and relies on statistical modeling to model the relation between the sample and population. In this week, we will use the example of the 2016 U.S. Presidential Election to illustrate why there is a renewed 21st century battle between the two paradigms in how to do inference.
Prepare for class:
 https://www.technologyreview.com/2020/02/14/844770/pollstersgotitwronginthe2016electionnowtheywantanothershot/
 https://www.politico.com/news/2020/06/17/trumppollsbiden324210
 Blumenthal, M., Clement, S., Clinton, J. D., Durand, C., Franklin, C., Miringoff, L., … & Witt, G. E. (2017). An evaluation of 2016 election polls in the US. link
 Meng, X. L. (2018). Statistical paradises and paradoxes in big data (I): Law of large populations, big data paradox, and the 2016 US presidential election. The Annals of Applied Statistics, 12(2), 685726.
Lecture: Two models for inference. The 21stcentury war in survey science.
Class Exercise: Analyse presidential polls for the U.S. election. What type of poll was better at predicting the U.S. election? Introduction of the key terms: error and bias
Take home Exercise: adopt a survey. Every student will adopt one survey (from a longlist). Every survey comes with documentation on the survey design, as well as survey dataset. on this in weeks 3743), and then correct for unit and item nonresponse for this survey. There is also a list of suggestions of surveys to adopt in the exercise.
Week 38: Total Survey Error and survey modes
Topic: Design based surveys are based on the central idea that you start a study by drawing a random sample from your target population. You then approach these people, and ask them to participate in your study. People typically answer some questions, after which you record the responses in a database, and then conduct analyses.
There are many steps in this process where bias or error can be introduced. The Total Survey Error framework can be used to conceptualize these errors, and assess where in the survey process things go wrong. In order to illustrate the TSE framework, we discuss the choice of survey mode (whether you use Internet, mail, telephone or inperson interviews) and its impact on survey error.
Prepare for class:
 Groves, R. M., & Lyberg, L. (2010). Total survey error: Past, present, and future. Public opinion quarterly, 74(5), 849879.
 Biemer, P. P. (2010). Total survey error: Design, implementation, and evaluation. Public Opinion Quarterly, 74(5), 817848.
 Finish the take Home exercise
Lecture: Total Survey error and survey modes.
Class exercise 1: What survey mode would you use (joint exercise)
Class exercise 2: Review the U.S. presidential election data. What is error and bias across survey modes?
Take home exercise: Drawing simple random samples. Bring your results to the next class.
Week 39: Sampling 1: simple random sampling
Topic: Under a designbased model for inference, the process of drawing a sample is important. It is also the part of the research cycle that is entirely under the control of the researcher; nonresponse for example is much less so. Sampling is an important element of statistics and is therefore discussed in some detail in this course. In this week we focus on the most fundamental sampling principle, where every element of the population has an equal, nonzero chance of being selected into the sample.
Prepare for class:
 Lohr (2010) chapter 1 (intro, no need to closeread) chapter 2 and/or
 Stuart (1984) until page 34
 Finish the Take Home Exercise from the previous week. Bring the results to class.
Lecture: In the lecture we will review the basic idea of simple random sampling. We discuss sampling with/without replacement and their effects. We will also discuss the population size (finite population), and introduce the idea of estimators.
Class exercise 1: Drawing samples in R. We will discuss the basic idea of sampling, and how this can be done in R. The results from everyone’s sample will be used to produce a sampling distribution that will be used to illustrate the concepts of bias and error again
Take Home exercise: Statistical software packages assume that the data you use reflect a simple random sample and it is not necessary to tell the software how you drew the sample. In later weeks in the course, when we discuss more complex sampling procedures, you need to ‘tell’ the software what sampling design you used. You will practice with specifying a general survey design in R using the data you generated in the class exercise.
Week 40: Sampling 2: stratification and clustering
Topic: In practice, real surveys seldomly use a simple random sampling design. We will discuss why stratification is often used to make the sample more efficient (allowing smaller samples), and why clustering is used to limit survey costs.
Prepare for class:
 Lohr (2010) chapters 3,5 and 6
 Stuart (1984) p. 3571
 Finish take home exercise week 39
Lecture: We start by discussing the Take home exercise. After this, we illustrate the benefits of stratification for survey efficiency and clustering for survey costs using example data. We
Class exercise: Specify a stratified and clustering design in R
Take home exercise: Review the survey documentation of your adopted designbased survey (see week 37). Work out the sampling design on paper (not in R!), and bring the results to class.
Week 41: Using R for analyzing survey datasets
Topic: practicing with using R for doing survey analysis, with a focus on stratified and clustered designs
Prepare:
 Finish the take home exercise of the previous week
 No new reading. Catch up with any chapters you didn’t read yet.
Lecture: no lecture
Class exercise 1: design effects. The efficiency of a sampling design can be expressed by the design effect. We study how this is produced in R.
Class exercise 2: the HorvitzThompson estimator. Apart from specifying the specific survey design, correct inferences can also be done by directly using the inclusion probabilities of sample elements into the survey design. You will compute probabilities, and use these in R.
Take home exercise: further exercises on complex sampling designs (multistage)
Week 42: Modelassisted survey estimation
Topic: We discuss two popular estimation methods that are often used in cluster and multistage sampling designs: Ratio and Regression estimation. The goal of these estimation methods is to make the estimation of a statistic of interest (e.g. mean) more efficient by using auxiliary variables. Inference is here not only using the inclusion probabilities anymore, but inference is being ‘assisted’ by the use of a statistical model. We introduce the idea of modelassisted inference.
Prepare for class:
 Lohr chapters 4, 7
 Stuart (1984) 7190
 Finish the take home exercise
 Preparation for class discussion: find out what auxiliary data (at the sample level) is available for the survey you reviewed in week 40, and bring a list of auxiliary data to class. Think about the following question (after reading the literature): would it be a good idea for your survey to use ratio/regression estimation is you are interested in estimating one of the variables of interest in your survey?
Lecture: We discuss a practical and fictitious example where data are clustered to illustrate why ratio/regression estimation is sometimes so attractive. The biasvariance tradeoff as a concept is discussed and illustrated.
Class exercise 1: Set up a ratio and/or regression estimation model for a cluster sample dataset Exercise in class: Discussion – when is it a good idea to use ratio/regression estimation?
Take home exercise (for week 44): R exercise to work with Nonresponse weights: In this exercise you learn how to work with existing nonresponse weights in R using the survey package.
Week 43: Classfree Week.
Catch up on readings and exercises. Review parts of lectures/exercises again that you found difficult.
Week 44: Nonresponse and weighting
Topic: Every survey suffers from nonresponse. Nonresponse rates are often large and are thought to be often the largest source of survey error. As long as information for the entire population or sample is available, nonresponse error can to some degree be assessed and adjusted for.
Prepare for class:
 de Leeuw, E., Hox, J., & Luiten, A. (2018). International nonresponse trends across countries and years: an analysis of 36 years of Labour Force Survey data. Survey Methods: Insights from the Field, 111.
 Kalton, G., & FloresCervantes, I. (2003). Weighting methods. Journal of official statistics, 19(2), 81.
 Brick, J. M. (2013). Unit nonresponse and weighting adjustments: A critical review. Journal of Official Statistics, 29(3), 329353.
Optional: Bethlehem, J. G., & Keller, W. J. (1987). Linear weighting of sample survey data. Journal of official Statistics, 3(2), 141153.
Optional: Lynn (1996) Weighting for nonresponse. Survey and Statistical Computing 1996, edited by R. Banks
Lecture: We discuss how nonresponse can be assessed and nonresponse correction factors (weights) can be computed based on either target population or sample frame data. We discuss weighting by poststratification, linear weighting and raking.
Exercise in class: R exercise computing your own nonresponse weights using poststratification, linear weighting or raking.
Week 45: TEST (40% of grade)
Covering all materials from weeks 3744 (slides, readings and exercises). The exam consists of an openbook Takehome exam. The exam will be available on Blackboard at 09:00. You then have until 14:00 to finish the exam, but I do not expect anyone to work for more than 3 hours on the exam, giving you about two hours for breaks and/or unexpected problems (i.e. coffee breaks, Internet problems, R issues, people ringing your doorbell etc.).
You will need:
 A computer including R and MS word, connected to the Internet.
Content of the exam: For some questions you will receive input in the form of .R syntax. Based on a dataset that will be generated using Rsyntax, some questions will concern the syntax itself, the dataset, and an interpretation of the results of several analyses performed on the dataset. You will thus not be required to write Rsyntax during the exam, but will be required to run analyses, and slightly adapt the syntax, as well as understand the results as they are presented in R. You will also receive some theoretical problems (cases) where you are asked to reflect and use concepts covered in the course, and apply these to the theoretical problems. You may use the literature, slides, exercises, R, and the Internet to come up with your answers. You complete the answers in an answer sheet in MS Word and send the exam back by email. You will receive a confirmation of receipt by email. Wait for this confirmation before turning your computer off. In case there are issues during the exam, please send an email to the course coordinator who will be on standby to help
What can I not do:
 You are NOT allowed to contact your fellow students, or other human beings for help. In case answers are identical or very similar, this will be regarded as fraud. In case the answers of two students appear just similar (suspicious), the teacher will ask the respective students to participate in an extra individual oral exam.
Before week 46
For the final assignment you will work in a group of about 4 (+ 1) on a reallife dataset. The goal is to apply all the materials covered in the course, answer a substantive research question and solve a ‘challenge’ that covers an advanced problem in survey research. You will receive an email on your @students.uu.nl account with more information about group membership, the assignment itself and your group members this week.
Week 46: Missing data 1
Topic: Missing data form a ubiquitous source of problems that most scientists or researchers cannot escape. For example, in survey applications, such as in social sciences or in official statistics, where vast amounts of data are collected, respondents often neglect to answer one or more items. A state of the art solution for this problem is multiple imputation. With imputation, some estimation procedure is used to impute (fill in) each missing datum, resulting in a completed dataset that can be analyzed as if the data were completely observed. When only one value is imputed (single imputation), uncertainty about the imputations is not reflected in the imputed data set and specific methods for variance estimation that take imputed values into account need to be employed. As a more versatile way to solve this, uncertainty about the imputed values can be taken into account by performing multiple imputation (MI). With MI, each missing datum is imputed m ≥ 2 times, resulting in m completed datasets. At least 2 imputations are warranted to reflect the uncertainty about the imputations, although performing more imputations is often advisable. The m datasets are then analyzed by standard procedures and the analyses are combined into a single inference.
Prepare for class:
 Chapters 13 from S. van Buuren. Flexible Imputation of Missing Data. Second Edition. CRC/Chapman & Hall, FL: Boca Raton, 2018. Freely available from https://stefvanbuuren.name/fimd/
Lecture: We discuss why multiple imputation is the state of the art technique for drawing valid inferences from incomplete data.
Exercise in class: R exercise where use the R package mice to multiply impute an incomplete data set.
Week 47: Missing data 2
Topic: We dive deeper into multiple imputation and explore multivariate imputation, passive imputation and imputation problems where the focus lies on finding plausible imputations when there is some restriction posed on the imputation model.
Prepare for class:
 Chapters 45 from S. van Buuren. Flexible Imputation of Missing Data. Second Edition. CRC/Chapman & Hall, FL: Boca Raton, 2018. Freely available from https://stefvanbuuren.name/fimd/
Lecture: We discuss why multiple imputation is the state of the art technique for drawing valid inferences from incomplete data.
Exercise in class: R exercise where we find the answer to a scientific question of interest on incomplete data via multiple imputation with the R package mice.
Take Home Exercise (prepare for week 48): Students work in groups to prepare a presentation or video in which they discuss the mixedmode implications of the data set(s) they are working on for the final assignment. If their data contain a single mode, they will elaborate on how mixedmode design can improve their data set.
Week 48: Survey modes: design and estimation
Topic: Mixedmode surveys are almost inevitable today, especially for academic research and official statistics. Mixing modes has many advantages, but there are also some potential drawbacks. In this lecture we give an overview of issues in design and analysis and provide tools for designing, implementing and evaluating mixedmode surveys. We will discuss the most common designs for mixing modes. In analysing mixedmode data it is important to distinguish between selection effects (who responds to which mode) and measurement effects (effect of mode on answer). We will discuss the implications of mixing modes for questionnaire design, total survey error, logistics and data analysis.
Prepare for class:
 De Leeuw, E.D. (2018). MixedMode: Past, Present, and Future. Survey Research Methods, 12, 2, 7589. https://ojs.ub.unikonstanz.de/srm/article/view/7402/6582
 Toepoel, de Leeuw & Hox (2019). Single and mixedmode survey data collection. Sage Research Methods foundations (on blackboard)
 Kolenikov, S., & Kennedy, C. (2014). Evaluating Three Approaches to Statistically Adjust for Mode Effects. Journal of Survey Statistics and Methodology, 2(2).
Lecture: In the lecture we discuss the design of mixedmode surveys and its implications.
Exercise in class: Students are assigned in groups to a presentation or video of their peers. They will discuss the pro’s and con’s of the peer presentation, and give suggestions for improvement (since there is often not one single road to Rome). They will present their findings at the end of the lecture.
Week 49: Inference for nonprobability surveys
Topic: In week 42 we discussed modelassisted survey inference. This week we go one step further and discuss modelbased approaches. A statistical model is used as the basis for performing inference; inclusion probabilities no longer play a role.
Prepare for class:
 Meng
 Cornesse, C., Blom, A. G., Dutwin, D., Krosnick, J. A., De Leeuw, E. D., Legleye, S., … & Struminskaya, B. (2020). A Review of Conceptual Approaches and Empirical Evidence on Probability and Nonprobability Sample Survey Research. Journal of Survey Statistics and Methodology.
Lecture: We review the U.S. presidential dataset again. How does one design a good inference model? The Total Survey Error Model is reviewed, with a focus on nonprobability based datasets
Exercise in class: Can you model? We introduce a short competition. Who can design the best model?
Take home exercise: Finish your model: send it by email before the lecture of week 50.
Week 50: Designed Big data
Topic: The increasing volume of Big Data produced by sensors and smart devices can transform the social and behavioral sciences. We will discuss how the true power of these data for the social sciences that lies in integrating Big Data with surveys. Using examples of successful existing studies that used digital data to provide new insights into social reality, we will focus on challenges and opportunities of integrating sensor and appbased data collection into surveys. The Total Survey Error framework learned in Week 38 will serve as a basis for our discussion of introducing design to Big Data to gauge the inherent challenges of representativeness and measurement. Students will develop a scenario of combing Big Data and survey data, focusing on theoretical and practical aspects of such data integration. Students will have a chance to make decisions on preparing the raw data for analysis and obtaining inference.
Prepare for class:
 Chapter 3 “Big Data: A Survey Research Perspective” and
 Chapter 2 “Total Twitter Error” in Biemer Paul B., Edith de Leeuw et al. (eds.) (2017). Total Survey Error in Practice. John Wiley & Sons, Available through UU library (DOI:10.1002/9781119041702)
Lecture: In the lecture, we will discuss the types of Big Data, how types of errors from the Total Survey Error relate to Big Data, and how to combine survey data with Big Data sources.
Exercise in class: For class exercise, you will design a scenario that combines survey data with one or several Big Data sources.
Take home exercise: You will have a chance to analyze smartphone sensor data that you yourself have produced (e.g., from Apple Health). This exercise is optional, if you perform it, send your insights into your behavior and a short discussion on a possible research question and construct validity to b.struminskaya@uu.nl for extra credit.
Week 51: Student presentations
Topic: In week 46 of the course, groups of about 4 people are formed, who will together work on the final assignment. The final assignment is based on the work of these 4 people. You will get a reallife dataset and have to solve a research question for this dataset. Every dataset will have one unique challenge that will vary over each dataset. There will be datasets based on a nonprobability sample, some datasets may have used mixedmode data collection, some may have a complex set of nonresponse weights, some a complex missing data structure, and again another one may have collected mostly categorical data. The assignment will highlight what the specific challenge is of the dataset. More information will be available in the assignment itself.
Prepare before class:
In the final assignment you will have to:
 Do selfstudy to figure out how you can deal with the specific challenge, and explain how you used additional literature to tackle this problem.
 Perform one or more analyses to answer a substantive research question posed in the assignment.
 Carry out the analyses in R.
 Write a report in Rmarkdown (using default layout) documenting what you did, and why you did so.
 Prepare an online document that shows other students what challenge you were given, and how you dealt with the challenge. You may (or should!) be creative here. The document should be selfcontained, so it could be a website (.html document), a wiki, a digital poster, a shiny app, a discussion/performance that is recorded on video or something else. It is not allowed to hand in a document with text (or code) only or use use Powerpoint/Prezi slides. Creativity get bonus points (see rubric final assignment). The product should be selfcontained, and take no more than 6 minutes to watch/read/listen to. You have to send the presentation to the course coordinator, and all other students (this can easily be done through Blackboard > send email) by December 11, 17:00
 Every group reviews the work of 1 other group (see the assigned schedule on Blackboard for this), and prepares 3 questions for the group to be asked during the meeting.
Lecture: There will be no lecture. However, we will go through the questions that are prepared by each of the groups (so 5/6 short discussions). After this we more generally discuss how every group dealt with the challenge(s) in the assignment.
After the lecture: You have the opportunity to also hand in a draft of your report by 14 December at 17:00 latest. You will then receive written feedback on what can be improved before Friday 18 December 17:00. It is not obligatory to hand in a draft version.
Week 3
Hand in written final report (graded 50%). This assignment will be graded using the rubric posted on Blackboard. Three of the rubrics here concern the presentation and discussion of week 51. All students in the group normally get the same grade. However, it may be the case that some members of the group get a higher or lower grade depending on their performance in the group work as judged by the course coordinator.